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References

Dealing with internet restricted compute nodes in a cluster

August 16, 2019 Joseph Paul Cohen

There are some clusters, such as Beluga in the Compute Canada/Calcul Québec system of computers, which restrict access to the internet on compute nodes. One […]

Research Advice

February 16, 2019 Joseph Paul Cohen

Here is a collection of advice from different people about how to do good research and write good papers. From Simon Peyton Jones In his […]

Printing through an SSH server to LP

April 18, 2018 Joseph Paul Cohen

In some situations direct access to a printer is restricted (when JetDirect access to port 9100 is blocked). Typically the goal is that everyone prints […]

Machine Learning and Deep Learning References

April 13, 2017 Joseph Paul Cohen

  To Code Languages: Python and R Frameworks: PyTorch Older Frameworks: Theano and Lasagne Example code: NeuralNetwork-Examples Tutorials https://aldro61.github.io/microbiome-summer-school-2017/ To Watch Stanford CS229 – Machine Learning – […]

Jupyter notebook and HPC systems

February 16, 2017 Joseph Paul Cohen

Jupyter notebook [jupyter.org] is an interactive shell in a web browser that can display output, graphics, and tables inline to make research and development faster, […]

Visualizing CNN architectures side by side with mxnet

January 14, 2016 Joseph Paul Cohen

Convolutional Neural Networks can be visualized as computation graphs with input nodes where the computation starts and output nodes where the result can be read. […]

Cyber Security Competition Study Guide

September 7, 2015 Joseph Paul Cohen

To study you should try challenges yourself as well as read writeups about how people approached solving these types of problems.

Visualization of Attribute Subset Wrapper Search Space

January 31, 2015 Joseph Paul Cohen

Many researchers working on attribute subset selection focus on finding the most discriminating subset suboptimal solution using various methods such as greedy search, best first, […]

SSH behind firewall using simple ncat proxy and unmodified intermediary server

November 25, 2014 Joseph Paul Cohen

Sometimes we want to SSH to machines that are behind restrictive firewalls or just because the IP keeps changing. Here I discuss a way to […]

Learning LaTeX Resources

May 7, 2014 Joseph Paul Cohen

This will be a latex reference page. For now I’ll just post links to great references: Watch a video about how to get going with […]

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Selected Projects

  • Counterfactual Explanations for Chest X-rays

    February 19, 2021
  • TorchXRayVision: A library for chest X-ray datasets and models. Including pre-trained models

    January 4, 2021
  • Building a public COVID-19 dataset of X-ray and CT scans

    March 21, 2020
  • Icentia11k ECG Dataset

    October 1, 2019
  • Chester the AI Radiology Assistant

    January 31, 2019
  • ShortScience.org – share summaries of research papers

    April 15, 2016
  • BlindTool – A mobile app that gives a “sense of vision” to the blind with deep learning

    December 31, 2015
  • Academic Torrents – A Platform for Sharing Data

    October 15, 2013
  • Blucat – netcat for Bluetooth

    September 26, 2012

Recent Posts

  • Math Fancy – LaTeX Equation Editor
  • Let’s stop reviewing for publishers that profit from research
  • Counterfactual Explanations for Chest X-rays
  • TorchXRayVision: A library for chest X-ray datasets and models. Including pre-trained models
  • Medical Imaging with Deep Learning Tutorial

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    Presentations
    • Medical Imaging with Deep Learning Tutorial

      July 13, 2020
    • Generalization challenges and making models right for the right reasons in medicine

      February 14, 2020
    • Representation learning

      February 10, 2020
    • Machine Learning for Medical Text and EHR (word2vec, RNNs)

      December 20, 2018
    • Distribution Matching Losses Can Hallucinate Features in Medical Image Translation

      September 20, 2018
    • A survey of deep learning approaches to medical applications

      February 1, 2018
    • Working with a Raspberry Pi

      October 29, 2015
    • High Performance Computing How-To

      February 28, 2015
    References
    • Dealing with internet restricted compute nodes in a cluster

      August 16, 2019
    • Research Advice

      February 16, 2019
    • Printing through an SSH server to LP

      April 18, 2018
    • Machine Learning and Deep Learning References

      April 13, 2017
    • Jupyter notebook and HPC systems

      February 16, 2017
    • Visualizing CNN architectures side by side with mxnet

      January 14, 2016
    • Cyber Security Competition Study Guide

      September 7, 2015
    • Visualization of Attribute Subset Wrapper Search Space

      January 31, 2015
    Reports
    • Let’s stop reviewing for publishers that profit from research

      July 8, 2021
    • No more page numbers

      February 7, 2018
    • Visualizing CNN architectures side by side with mxnet

      January 14, 2016
    • HRSC vs HiRISE Martian Imagery

      December 2, 2013
    • Open Letter: Students Facing a Systematic Disadvantage at UMass Boston

      March 24, 2013
    Software
    • Math Fancy – LaTeX Equation Editor

      December 10, 2023
    • TorchXRayVision: A library for chest X-ray datasets and models. Including pre-trained models

      January 4, 2021
    • JoeGlass (MyGlass Replacement)

      December 23, 2013
    • UMass Boston Wifi Autologin

      October 26, 2012
    • Blucat – netcat for Bluetooth

      September 26, 2012
    • Pojo Explorer for Java

      July 3, 2012
    • GravityScript – add gravity to websites for fun

      April 20, 2011

    2025 Joseph Paul Cohen